Scaffold Ga0224501_10098471

Overview

Basic Information

• Taxon OID: 3300022223
• Scaffold ID: Ga0224501_10098471
• Source Dataset Name: Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_8_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1789
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.03
  • Long. (^o): -122.15
  • Depth (m): 14

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015812	Metagenome / Metatranscriptome	252	Y
F106085	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224501_100984713	F106085	AGG	MTNNPLERLRKKLLFLLDNTKNKFTILKKPSKNNKIIINKDIKNNIPKHLKGLNNKQIKDLQSLFKKRI
Ga0224501_100984714	F015812	GGAGG	MSKTLYKRLEDICAREYVVNKLSEDKFRTFVDFLYDDIRTWDRPTDVSDVDVIHRIEEHLSYMVSRRLADTHIGTNHD