Scaffold Ga0224506_10003737

Overview

Basic Information

• Taxon OID: 3300022221
• Scaffold ID: Ga0224506_10003737
• Source Dataset Name: Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_8_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10009
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (9.09%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.03
  • Long. (^o): -122.15
  • Depth (m): 14

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048411	Metagenome	148	Y
F056151	Metagenome / Metatranscriptome	138	Y
F062174	Metagenome	131	N
F065620	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224506_1000373716	F065620	N/A	MNSIKELNTIVQDFDYKMAKIELAINNGGNSLDKQQDLLLDYQDYQARKFLAIKEINKIISK
Ga0224506_1000373722	F056151	N/A	MQKLKTNHYKSQILNTKKIKMNNNVYIGFNINNLQDVKIKDKLNICDVVEFNIKGMSYINKNNIKKSTLQFI
Ga0224506_100037375	F062174	N/A	MIDPKITKDLDNYLTYHRKIQRMKELMGGGYRMEMNVESCKPLIDDGFDLSDIVEYFILELRDYTDNRYIDDVKKEKEKENDA
Ga0224506_100037377	F048411	N/A	MTITINWNDGTYTFNHGNKIITKSTLQNKKDCDNITNEINEMFNELQQ