Scaffold Ga0224506_10000004

Overview

Basic Information

• Taxon OID: 3300022221
• Scaffold ID: Ga0224506_10000004
• Source Dataset Name: Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_8_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 372275
• Total Scaffold Genes: 390
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 258 (66.15%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.03
  • Long. (^o): -122.15
  • Depth (m): 14

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009657	Metagenome / Metatranscriptome	315	Y
F089535	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224506_10000004328	F009657	GGAGG	MKEYEILSDTGTCRKLVAKINRMAKEGWQAKSIGGLGAPTGISAVYVLLEREVPEP
Ga0224506_1000000471	F089535	GGAGG	LKIERIVVGKGKSVPHDGPEGEWSKVYYQLEAVPAESEDVQAIRMSLEGILDQWLSVEAKPEAEVPKIDLAELDGLPWTTYKTKEPAKEGEAGWIFANTKGAEELAKAMQKSEGKLELGAYEYSFSGSENRFISRRPRRNKDG