Scaffold Ga0224513_10087735

Overview

Basic Information

• Taxon OID: 3300022220
• Scaffold ID: Ga0224513_10087735
• Source Dataset Name: Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_21
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1180
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.79
  • Long. (^o): -122.36
  • Depth (m): 17

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015079	Metagenome	257	Y
F063642	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224513_100877352	F063642	N/A	MQHTSTPLFDEVIQMATPDCIMKRDMTLVRKLKNLQDYTERIEKLLDDAMSTLEDATK
Ga0224513_100877354	F015079	N/A	MVQAQIESIQGKGDWKGKHGTMYTFEIAFNDGTVGEANSKTQEPPYKVGDEVYYEIKREDQYGKKLKVSKNPPPPGGFQQFQPAKQDPDKDKKMIRGMCFKVAGMAWACNYKHKQFELPHEVMVKDVITLAKKYEQAYNEWMSE