Scaffold Ga0224513_10000053

Overview

Basic Information

• Taxon OID: 3300022220
• Scaffold ID: Ga0224513_10000053
• Source Dataset Name: Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_21
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35101
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (86.79%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.79
  • Long. (^o): -122.36
  • Depth (m): 17

Associated Families

Family	Category	Number of Sequences	3D Structure?
F069851	Metagenome / Metatranscriptome	123	N
F087904	Metagenome / Metatranscriptome	110	Y
F104782	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224513_1000005319	F087904	AGGAG	MALSSEMQAQVEQQNATEDNRAANQAASEAKRAKLDMVRMAKEILVENRRTQAAADATNITASAVIGLATELTAFVNS
Ga0224513_1000005335	F104782	AGG	MPEYVIAMSAEEMSEFLESEFYDLEDNPKRCIATMMAMLIDHTEFLEEQGLEEKFDFLYDKDGGDLH
Ga0224513_1000005349	F069851	GGAG	MSLIDAIDANLEDLVDPKNRCVEATDAAANELVIAATEESPDELQELMFHESSNAVNAQFHVDMAKAFAGKMSHDDFFIKYEHYFDIAKRFIMEDLDSKIWNRYTDLHDVPVLDMHDYNGVRREDF