Scaffold Ga0224502_10061373

Overview

Basic Information

• Taxon OID: 3300022218
• Scaffold ID: Ga0224502_10061373
• Source Dataset Name: Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_13
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1413
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.03
  • Long. (^o): -122.37
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033250	Metagenome	178	N
F038464	Metagenome	166	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224502_100613732	F038464	AGGA	MKTITLSPLHDLQIRKPAEWTALVDLTVSWPTDPEDPRHRPQMARVCAAAIGLVLDDERLSVPAYRTASMDPVAYGVSVLEVLIPQRVQLAEIIRAGREVADWLAGTLPSEQEVAQTADFTDGGESRT
Ga0224502_100613734	F033250	N/A	TVRQLSPVFEAGGTIDLEVLRPILEQHAASMVEDARTGWPVDTGISREAWQAEIDVSPTELFVSLINEARQRGRGYAVYIHRARSQRLVWTEVQERLTLNLIPALQADIALTLAESMRG