Scaffold Ga0224500_10016090

Overview

Basic Information

• Taxon OID: 3300022213
• Scaffold ID: Ga0224500_10016090
• Source Dataset Name: Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_4_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3282
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.05
  • Long. (^o): -121.934
  • Depth (m): 11

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035288	Metagenome / Metatranscriptome	172	Y
F095168	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224500_100160902	F035288	GAG	MPARKPVDAEGSVKPAAAKTNPALPGSSVRKLEDVAFEVRRLREEEGLDLQQIGEVLQVSYDVLNQLILQSYKSVMNTPVVFEAQENLRLGIEG
Ga0224500_100160905	F095168	GAGG	MARDFKHLINDVKELVSASARTAAVEIMNGLVEAGPGYSGQFSSAWYAVEPGQQAGGPRSAGGHTYKYDLRNVPAARFRSGTYYEIVNGSSYAAQALDLEDGSFRTQYDADGNILVPVKDPVSVGTRTGSKRGQGSSGAGFAVSTAPLDWYVTYTNGGALQRDLGNGVKIGFRQGPRGGNTPGTGFG