Scaffold Ga0224495_10312110

Overview

Basic Information

• Taxon OID: 3300022208
• Scaffold ID: Ga0224495_10312110
• Source Dataset Name: Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_4_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 632
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.05
  • Long. (^o): -121.934
  • Depth (m): 11

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067537	Metagenome / Metatranscriptome	125	N
F087066	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224495_103121101	F067537	N/A	GDRVAERPKPHGIYTDNQQTKERISQYRSQRYGEVVGINYKKNSRGATQKFLLVRWDHLPSPTEHATARICPVSALERLTKEVLVPGE
Ga0224495_103121102	F087066	AGAAG	VNDMTENQIQFLRGCCATILAFATTGLIAAIFLSPDEPKNNSKFEVIDQYEGCSVIRYTDPTTRWHYFLKCS