NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224495_10004613

Scaffold Ga0224495_10004613


Overview

Basic Information
Taxon OID3300022208 Open in IMG/M
Scaffold IDGa0224495_10004613 Open in IMG/M
Source Dataset NameSediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_4_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8142
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.05Long. (o)-121.934Alt. (m)Depth (m)11
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010066Metagenome309Y

Sequences

Protein IDFamilyRBSSequence
Ga0224495_1000461310F010066N/AMRPLLTFNCFSCTFKSPKSDFSLLSFLMKFTWLSLIVLIFLAGSCASGPKTAIKKIDWGSRIGTYTYEEALAELGEPDVISESSEGKTAEWVLRRSPGVSLGFGIGSGSYGHHTSMGVGVGTSVSPPPSGEYLHLRFDKDGKLAEWSRVRY

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