Scaffold Ga0224495_10002471

Overview

Basic Information

• Taxon OID: 3300022208
• Scaffold ID: Ga0224495_10002471
• Source Dataset Name: Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_4_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12003
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.05
  • Long. (^o): -121.934
  • Depth (m): 11

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006410	Metagenome	374	Y
F012730	Metagenome	278	Y
F106037	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224495_100024712	F106037	GAGG	MAKVSCRECYFIKASGPSLDYLIEKAKRAVDEIGVPPKYHINLYKNVYACCGVSGTGLILEVTGPSEQKIKSLDLKAVAKILELCEKEKIEHHHFEPLEIG
Ga0224495_100024714	F006410	GGA	MAEKPKISPEKAKEMQERSRERSLILNQIKNQGPQTLDELSKVTGIDKEKLFKHMIAMRQFGKVAIAGERDNQLVYGLPEG
Ga0224495_100024716	F012730	GAG	LRRALSTVGFEEMKGKTFTEIRVTEKLCEVCDKPIRAEEQILKTVQINDYDSYSNLLTRQRAHDRVEVDLEENKIYLYHHDYPGDVHPSCIDKL