Scaffold Ga0224495_10000653

Overview

Basic Information

• Taxon OID: 3300022208
• Scaffold ID: Ga0224495_10000653
• Source Dataset Name: Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_4_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26450
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.05
  • Long. (^o): -121.934
  • Depth (m): 11

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038243	Metagenome	166	Y
F042335	Metagenome	158	N
F099280	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224495_1000065311	F099280	AGGA	MAQPTTEAAMPEPAMGMDLPEDMSGIPSPMAEEGAVTISVAKSKFDELHSIAMQLAGVIDALAADVEGQKAVTESLEGKAPAAENAAMASEEDFLNSIASEGSIR
Ga0224495_1000065325	F042335	AGG	MNDNTTSHGVLGTIVSTTGFIVSMLPEIEESIRIMGGIISIIAGVLTCIYMAKQIIKK
Ga0224495_100006537	F038243	GGA	MRPQIEYKLLQNGTNEFLELVDFSEEFNHKIIEHPNINVYAHYRNGVLFGYSDHVFIPTIYPAFHPKYTRPQDVIQVMSDWKAHSQLSNSPGFIGVPLADERPNFTNQIIEKLGLTPLKREVYSLA