Scaffold Ga0224495_10000301

Overview

Basic Information

• Taxon OID: 3300022208
• Scaffold ID: Ga0224495_10000301
• Source Dataset Name: Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_4_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39970
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (31.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.05
  • Long. (^o): -121.934
  • Depth (m): 11

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014513	Metagenome	262	Y
F023326	Metagenome	210	Y
F025268	Metagenome / Metatranscriptome	202	N
F097170	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224495_1000030112	F014513	GGA	MGDTLKDMAELVKGFVGDSGVCSDEKAFKAINQARRLLWNKRAWTTQEEYVQICCVNNCFTLPNRYEQIKLAWIGNDSASLGDEWFNATNAFALNSNQSCHRLITEIGGKHVLFRDYTSRPYRLGVMLESAEDIGVTLTFEVQDQYDTYHTIKITGVNPPNLAQSDLLIKGVRSVSKTATKGRVRIYAYDTLLEAKTMISVYQPNDINPSFRRFKAPKTCECITLYASKRYFDLVDEQELVEFTAEAMYFAILAINSRENRRAQEFLINLDLAVKEEEKEMEGEEIPTAAPLRIVNYQRAQNLMGSYMGSLSSSDYFFDQN
Ga0224495_1000030115	F097170	N/A	MPTEGSVFDGFTSIIAQDADTHPSYLPEFYVSESVNRTFRGGINRTRPSIRNLKIVAGIGQSETIVNDIENGNFQGAYPYRKVTPEALGDGLIISVEGKIYFLHIKNNVAYAYILPGIQSWNDGSLMHTWFVQAEDWVYIQNGYQYAIAWNGDIHTNAYRLLPSKQQMPIGTIMEYAFGRVFVSDKYNNIYASDIIFGNGFTDTKNTQNFTEITYWAEGGAFATPATMGNITAMKVMPYIGGNLRGQGELVVLTTNGAFSMDVSIPRLLWNESNIQRISLLGRGCASPYTSLVNSELWFRSHDGWAFYSNSQSEFGRYFALRKLSREVNKWVNLDTRWLRQFESAMYTNNYLLSTVAPQTKKNQARGLHRYHKGMVVLDLDQTASPSPDANLTFRWNGVWTGFRPTQLLTASIDEQQRGFGFSFDTDEKNRLYEVTGEAGDDYGPSGTRQIESFITTGRYDFSRTQATNKFMRKKLTGGEMWLSEVPGEVESSVDYRSDSNQCWNELKVPTTFGCNPCSPVVDGCVPRTGGNQYKRYKFTTPDPTICNDISEIPAVEGSEFQLKISLTGTATIDRVRIMANIKNNEDSPIGDCPEDIQECADICCPDRYWDYTIQ
Ga0224495_1000030136	F025268	N/A	MSEMIQFNSCEELDSFFREGREYFNDLYVKKLVTNSTYFTRFTEEPWPLNHTTEQKAFRFGRGFHDPCTPFRKIVDGYCETDSCSTNSEVIQRPGTESYTFELLRKEMHTDWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRANYIGGSGHKWLGVTTDDGTYCGLVDDAAWFVPTSDNIENTDSGYNLCEVRVKLAVADLPKVAYLSLDLLDDALIDLQNEDDAFRLDIADATGMQLLDIVIPDPRVGRALYFQAKRNNGYWDANTDFDARLSSLKLGVNRVIGDYAFGYDINAARFNAAPTADQPVEPFNPNDPTTFAKLIRVPRYTKIVQEQGCSYIPNKDYANADFAISVAMVSKAMTKWTMPSNTGYSQAQMASQNYAGDWEWKNPDWECNRWRKMGFYQAQYRLAAQVKDPTLMHTFLHRLPKTKNLYGSCCPLNDYTPPADPTDCYNCAGVGQPTP
Ga0224495_1000030141	F023326	N/A	MAFPDNMDDLSIELFCYAITRGQYGRTYCVKHNIEIGDFKLLTPFEHFIKAVQLQWPTDVSIKSRGYTNTQLIRTIEELCNNDDLVLAGAASMGKSFPVGLWILLDWCAAPTCTSSWVATTTIGASEDRIWGIISKLWKASRVKIGNLMDYRHMIVWGGGDGNDQRDYRNAIKALAFPQGNEGQKAIDTTRGRKNDRIRLALDELPEMEMGALTARVNLSSNDDKVFIGIGNPSAGDNPHTRWCTPNGQSNFESVTMDMDKWETETGVCLFYNGMRSPNFQAPPSEPPPFPFLMDRNKQAQMLKQCYGDENAIDYVRNAIGWWPKSGFNQTILTGDLIRNAATNEMPLWDSNGLTKVAGFDTAFTAGGDRCVLTIGTLGYVRGTNNKILHMDSQHVIQLSARETAEFEVQLATEVVRICRDAGVQPQKFGMDVSGDGGRVGQAIIREWLKHDQNGHSIVLISSMGKPTDRIAAEVDKRPCKEVYDRLVSEFWYSCYHGFKSRVIWGIDYADELGRELCLRRYTLKTRKIAIETKSDFKSRIGYSPDLADSFVYCLEMARRYGLVFIGNDKAVPTNRFWAREDRLVETTTVEDYSTDDWGE