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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022204 Open in IMG/M |
| Scaffold ID | Ga0224496_10002016 Open in IMG/M |
| Source Dataset Name | Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_8_1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12309 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (68.75%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 38.03 | Long. (o) | -122.15 | Alt. (m) | Depth (m) | 14 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F030967 | Metagenome | 183 | Y |
| F079544 | Metagenome | 115 | Y |
| F104375 | Metagenome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0224496_1000201613 | F104375 | GGA | VGELLNCPECHGTLVFPNGLKGETICKRCGLVIGRGRTSHGFTRWTPNWFSNWNENDSDTLREWLTTLRTVSCQLNLPNFPYREETARTIKLKSDVFFRSQRFGKNKREAIAALVHLVLRKYNEIRPLKEICETLSLDHRLVMKYAWAMRKMTGFHGTFSAKDYLRKYGWKLTSNAELIQRAEQLLTNVRREISGNPVSLAAGAFYFVCKSRKMKMSKDEIGEAFHISGRTVYSNERRISRLMSTKSFEL |
| Ga0224496_1000201614 | F030967 | GAGG | MNVEELKRLEDFEKRLNKLEAHGFEDTLTLVEILSSITFFGGLKMEKCKHAKEGQCGFFFLKSEAKKKIPIATDCRIKDCRGESDHCHLELSNVTCAFCPKAGISKT |
| Ga0224496_100020168 | F079544 | N/A | MRIEHERSQEKIVLTGLNLNETSLSEIRIKNTGTIEIKIRAIYVDNTFLCDPSTYNDTNIIPNNSSWIALPTGVAFEPEAKITATTERGVKTTEYEGPLVYKPAPPEWEYDPTRLYIGPLMLQFDAFWYRKTFQDGTPVPTGSWLPGWSVPKGLGYCAWNITVMNIDKRNITITRFSSFNAVPNDTPSNELPWYLEPTNQTDLTQFLPVNQTRNILYIWSVPKEEGANSAQKMTLPECTCMVFLTFFGFFHEHDGTTKPYAQTIPFEAAITVTG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |