NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224496_10001523

Scaffold Ga0224496_10001523


Overview

Basic Information
Taxon OID3300022204 Open in IMG/M
Scaffold IDGa0224496_10001523 Open in IMG/M
Source Dataset NameSediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_8_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14358
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (84.21%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.03Long. (o)-122.15Alt. (m)Depth (m)14
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030967Metagenome183Y
F079544Metagenome115Y
F102444Metagenome / Metatranscriptome101Y
F104375Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0224496_1000152313F030967GAGMKTLEELEERLEMLEKHEFEDTLTLIEIMSTMTFFGGLKTKKCKYAKEGQCGLFFLESDAKKKTPIATDCRIGDCEGELGHCHLELSNLTCAFCPEWPPNQHTKRDSE
Ga0224496_1000152314F104375AGGAGLNCPECHDTVVFPKGSDGELVCKNCGLVVNSPPTIPSFTKWAPKWFSNWDEDDSETLREWLTTLRTISCQLNVPNFPYREEAARMIRMNSNVLFRSQRFGKNKREAVAALVHLVLKEYDKMRPLKEISQKLSLDHRLVTKYAWTMHKMIKFHGTSLPTKDNLRKSAKDYLRKYGWQLTADAKLMQHAEQMLKNIRKQISGNPISLAAGALYFVCKSRNMKVSKDKIGEAFHISGRTVYSNERRINRLMSEKRHQILTGRQKTLQKLS
Ga0224496_1000152317F102444GGTGGLKTNSNCKALSPIFATLIILAIVTVLFIPVFIWSTGLTAETKSFWNISGEIATERIVIEEVNLRGGIQNCTMYVRNIGKTAITASDVFISSPDGALHIYGKADFVTDPDSVVQGDLTTVTISDLGGFNPVGNVTYTVKVFTSRGVGDTYQVVA
Ga0224496_1000152318F079544AGTAGVTVMKMLHVRKSLRCRKGVSTITSLFLILLMFSILIGIFLAFFDYNFVVLEQMKIEDERSQERIVLSGLELDNQTCLYNVTVKNTGTIEVRVRAIYVADGTTTAFICDPSAYMDTYIPPDRSLNISLPSGVPFKPEAKIIAATERGVKTKEYEALLVYGPPKPVWEYDPTKLYIGPLMLQFDAFWYRKTLGDGTLDPNEPWNPGWSIPKGFGYCAWNITVMNIDDRNITINRFSTFNVVPNDSPSTELPWYLEPTNQTDLTQFLPVNQTRNIIYIWADPKEASGDSRPQKMTLPECTCMVFLTFFGVFHEHDGTTTTYAQTIPFEAAITVVG

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