Basic Information | |
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Taxon OID | 3300022204 Open in IMG/M |
Scaffold ID | Ga0224496_10001523 Open in IMG/M |
Source Dataset Name | Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_8_1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14358 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (84.21%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 38.03 | Long. (o) | -122.15 | Alt. (m) | Depth (m) | 14 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F030967 | Metagenome | 183 | Y |
F079544 | Metagenome | 115 | Y |
F102444 | Metagenome / Metatranscriptome | 101 | Y |
F104375 | Metagenome | 100 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0224496_1000152313 | F030967 | GAG | MKTLEELEERLEMLEKHEFEDTLTLIEIMSTMTFFGGLKTKKCKYAKEGQCGLFFLESDAKKKTPIATDCRIGDCEGELGHCHLELSNLTCAFCPEWPPNQHTKRDSE |
Ga0224496_1000152314 | F104375 | AGGAG | LNCPECHDTVVFPKGSDGELVCKNCGLVVNSPPTIPSFTKWAPKWFSNWDEDDSETLREWLTTLRTISCQLNVPNFPYREEAARMIRMNSNVLFRSQRFGKNKREAVAALVHLVLKEYDKMRPLKEISQKLSLDHRLVTKYAWTMHKMIKFHGTSLPTKDNLRKSAKDYLRKYGWQLTADAKLMQHAEQMLKNIRKQISGNPISLAAGALYFVCKSRNMKVSKDKIGEAFHISGRTVYSNERRINRLMSEKRHQILTGRQKTLQKLS |
Ga0224496_1000152317 | F102444 | GGTGG | LKTNSNCKALSPIFATLIILAIVTVLFIPVFIWSTGLTAETKSFWNISGEIATERIVIEEVNLRGGIQNCTMYVRNIGKTAITASDVFISSPDGALHIYGKADFVTDPDSVVQGDLTTVTISDLGGFNPVGNVTYTVKVFTSRGVGDTYQVVA |
Ga0224496_1000152318 | F079544 | AGTAG | VTVMKMLHVRKSLRCRKGVSTITSLFLILLMFSILIGIFLAFFDYNFVVLEQMKIEDERSQERIVLSGLELDNQTCLYNVTVKNTGTIEVRVRAIYVADGTTTAFICDPSAYMDTYIPPDRSLNISLPSGVPFKPEAKIIAATERGVKTKEYEALLVYGPPKPVWEYDPTKLYIGPLMLQFDAFWYRKTLGDGTLDPNEPWNPGWSIPKGFGYCAWNITVMNIDDRNITINRFSTFNVVPNDSPSTELPWYLEPTNQTDLTQFLPVNQTRNIIYIWADPKEASGDSRPQKMTLPECTCMVFLTFFGVFHEHDGTTTTYAQTIPFEAAITVVG |
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