Scaffold Ga0224496

Basic Information
Taxon OID	3300022204 Open in IMG/M
Scaffold ID	Ga0224496_10001523 Open in IMG/M
Source Dataset Name	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_8_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022204 Open in IMG/M

Scaffold ID

Ga0224496_10001523 Open in IMG/M

Source Dataset Name

Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_8_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14358
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (84.21%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

14358

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (84.21%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.03	Long. (^o)	-122.15	Alt. (m)	Depth (m)	14
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.03

Long. (^o)

-122.15

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F030967	Metagenome	183	Y
F079544	Metagenome	115	Y
F102444	Metagenome / Metatranscriptome	101	Y
F104375	Metagenome	100	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0224496_1000152313	F030967	GAG	MKTLEELEERLEMLEKHEFEDTLTLIEIMSTMTFFGGLKTKKCKYAKEGQCGLFFLESDAKKKTPIATDCRIGDCEGELGHCHLELSNLTCAFCPEWPPNQHTKRDSE
Ga0224496_1000152314	F104375	AGGAG	LNCPECHDTVVFPKGSDGELVCKNCGLVVNSPPTIPSFTKWAPKWFSNWDEDDSETLREWLTTLRTISCQLNVPNFPYREEAARMIRMNSNVLFRSQRFGKNKREAVAALVHLVLKEYDKMRPLKEISQKLSLDHRLVTKYAWTMHKMIKFHGTSLPTKDNLRKSAKDYLRKYGWQLTADAKLMQHAEQMLKNIRKQISGNPISLAAGALYFVCKSRNMKVSKDKIGEAFHISGRTVYSNERRINRLMSEKRHQILTGRQKTLQKLS
Ga0224496_1000152317	F102444	GGTGG	LKTNSNCKALSPIFATLIILAIVTVLFIPVFIWSTGLTAETKSFWNISGEIATERIVIEEVNLRGGIQNCTMYVRNIGKTAITASDVFISSPDGALHIYGKADFVTDPDSVVQGDLTTVTISDLGGFNPVGNVTYTVKVFTSRGVGDTYQVVA
Ga0224496_1000152318	F079544	AGTAG	VTVMKMLHVRKSLRCRKGVSTITSLFLILLMFSILIGIFLAFFDYNFVVLEQMKIEDERSQERIVLSGLELDNQTCLYNVTVKNTGTIEVRVRAIYVADGTTTAFICDPSAYMDTYIPPDRSLNISLPSGVPFKPEAKIIAATERGVKTKEYEALLVYGPPKPVWEYDPTKLYIGPLMLQFDAFWYRKTLGDGTLDPNEPWNPGWSIPKGFGYCAWNITVMNIDDRNITINRFSTFNVVPNDSPSTELPWYLEPTNQTDLTQFLPVNQTRNIIYIWADPKEASGDSRPQKMTLPECTCMVFLTFFGVFHEHDGTTTTYAQTIPFEAAITVVG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0224496_10001523

Overview

Ecosystem & Geography

Associated Families

Sequences