NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224498_10075303

Scaffold Ga0224498_10075303


Overview

Basic Information
Taxon OID3300022202 Open in IMG/M
Scaffold IDGa0224498_10075303 Open in IMG/M
Source Dataset NameSediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)964
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.79Long. (o)-122.36Alt. (m)Depth (m)17
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018478Metagenome235Y
F099320Metagenome103N
F100003Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0224498_100753032F018478GAGMVKEYEAMDWSKEYTYKDKKIYISHETKKYIICSFNENGVGKFKLEKTEFYG
Ga0224498_100753033F100003N/AMKIKKKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNETMLNRNRIEQNGKRI
Ga0224498_100753034F099320N/AMDEQENVYSYCLEVHEDGNLYMVTEYMNGYITIWAANATIETEGEVYFINLYED

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