Scaffold Ga0224498_10014519

Overview

Basic Information

• Taxon OID: 3300022202
• Scaffold ID: Ga0224498_10014519
• Source Dataset Name: Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_21
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2114
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.79
  • Long. (^o): -122.36
  • Depth (m): 17

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019651	Metagenome / Metatranscriptome	228	Y
F033962	Metagenome / Metatranscriptome	176	N
F067130	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224498_100145191	F033962	N/A	MTELKQYMAEQKRIKVIQWNKERQGNHCQGFTQKEFEQSMEVDRIKSRTRRTHSKGNLWVFNDTKDRELFTK
Ga0224498_100145192	F019651	AGG	MTTLEKFQEEANINFVQTPSHADVELGELQTADGYELYYVTQDIQNLNYENELFYYKPDFDTIMSAIDDYRHGEDTANVVCYDIEDWFDEYDMLNWLESEMDEESFEAFTNET
Ga0224498_100145196	F067130	N/A	MQIEIDTVDLQNTLEQLYDRKVKLVAYASADGLDTLVLEGHEEDLFNFYLESFNPFNEWTSTDVVRSEFFAHILTK