Scaffold Ga0196901_1089259

Overview

Basic Information

• Taxon OID: 3300022200
• Scaffold ID: Ga0196901_1089259
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1088
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.8455
  • Long. (^o): -76.4191

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019314	Metagenome / Metatranscriptome	230	Y
F020162	Metagenome / Metatranscriptome	225	Y
F085595	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0196901_10892593	F020162	GAGG	VEDNKDYVPRSVTLADFLVVVSGFFVNIVRAVEMLASELLDLAVYNANRTTKVSRIWEQFTSDLEKMEDPNG
Ga0196901_10892594	F019314	GGAGG	MNMKKGGRAKASMAMPKEGSKSAPKPAGGEVKFGYAGKARKGKKA
Ga0196901_10892595	F085595	N/A	GMAPVPASQPTPEQMGAAPAAGSRPDIASLLASIAG