Scaffold Ga0196901_1047086

Overview

Basic Information

• Taxon OID: 3300022200
• Scaffold ID: Ga0196901_1047086
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1622
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.8455
  • Long. (^o): -76.4191

Associated Families

Family	Category	Number of Sequences	3D Structure?
F091971	Metagenome	107	N
F096206	Metagenome	105	N
F103914	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0196901_10470862	F103914	AGGAGG	MYTADRTDLLDALASSMRDCIETEISSTDFTLEEYFRCSLIDRGVASTRSEMIARRMAEGDLEGLAYHVASCDPHYLRKLIQAEPRLIHMLLQNNKMSDLDVKIVEEEVFK
Ga0196901_10470863	F096206	GGGGG	MSFTVDFGNIRETDKEGRKNLNSLQYWIGSYMMAIGMDEITEKNYLEVYARLRMLDTSILALGNDGDGEPWMDIDMLQRLIGAKFWGRHINVESRAKFSSRMLRNTIKATEKKLAKESKEVA
Ga0196901_10470864	F091971	GGAG	MNKLNQLFEPSKRLGSDKKYRHIVKGQIIQGDELEVNGVRRSFWSNPNGTYSCHMWNVSQGKVIDQITVDSFDGEDLQEFQLRTQDILWGV