NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196901_1025318

Scaffold Ga0196901_1025318


Overview

Basic Information
Taxon OID3300022200 Open in IMG/M
Scaffold IDGa0196901_1025318 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2352
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.8455Long. (o)-76.4191Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001915Metagenome / Metatranscriptome617Y
F017628Metagenome / Metatranscriptome239Y
F040590Metagenome161Y
F099270Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0196901_10253181F001915GGAGMNWTLAHPLHDVDDIVEMADSVFGVETDGILTRDRNVFRKNVTITATTQLFDKGREFLAVCRGDRIVSTMMGHGVVDDALLGYCWFDRGGYTTYANEEISNAKFHHVDLSLPAKQRVRLINQMIDQHILWANAWGIPVICSTSIRAEHDGFMRIHQKRGFKVNGSYAYIRTEDGMKGIK
Ga0196901_10253183F099270AGGMSTNFLYAQAPNRKGNVSKHTAMHSGGATADCGPKHGMSGPTGQQGAPKATGNIASRNQKVQVSTHADYCGCIKNDGYMNKSTKNYLG
Ga0196901_10253184F040590N/AMSYGKVISGGKAMTNGLTKGINNKLKGFEEGHKRSQTLATAVGKAFNQNPLVDNHLNNINVAADKKFTTPKLPTRI
Ga0196901_10253185F017628AGGMATYDIEALKADLPTAKDLAQFVYDKVGISLDLVGKPKEDQYMVARNALEGKKVPENFMTDLNPYIDRKELIPVDEKKTIPPRPADLPDPGSQVHFFGATNMPHPTDPQSDRKVQINFRKYDNGVI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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