Scaffold Ga0196901_1021269

Overview

Basic Information

• Taxon OID: 3300022200
• Scaffold ID: Ga0196901_1021269
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2609
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.8455
  • Long. (^o): -76.4191

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003073	Metagenome / Metatranscriptome	509	Y
F028792	Metagenome / Metatranscriptome	190	N
F029289	Metagenome / Metatranscriptome	189	N
F029934	Metagenome	187	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0196901_102126911	F029289	GGAG	MSSAIEPRYPNAASDPRLTNVADKWRTLNRQISDKDWNGEPVTNAERDKLTTLKRELNDGKFYTPNF
Ga0196901_10212692	F003073	AGGAG	MAKKLENMTPDERIAYFAALREKDRIQRRNRIAKLSLDQRVAVIKVYELLDEILETALYPDMGGIKAVTAYDLQELSDAKDRLRHEFNFDVREQG
Ga0196901_10212696	F028792	GGA	MVEMSNRGDYKVRVRLTTEREVIVNADGFDEAEAKALREVVALVDGYDAEVLWALEHGSLSDWEKKDGNDN
Ga0196901_10212697	F029934	GGAG	MATITKTCLACNGGGIAEYDKPRVDHANGGWIDSTYGKCDVCDGQGDLHVLSEFTSLDMMLFLNEVAKILEDADIVDSTLDDIYGHVKDARDKVREYIKFHGYDGDDR