Scaffold Ga0196901_1018247

Overview

Basic Information

• Taxon OID: 3300022200
• Scaffold ID: Ga0196901_1018247
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2858
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.8455
  • Long. (^o): -76.4191

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004278	Metagenome	445	Y
F009805	Metagenome / Metatranscriptome	312	Y
F020160	Metagenome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196901_10182472	F009805	GAG	MDIHVICVGEWMNSLLIRMNSAVDGDCFVLPTLMHLHAYNILKEGSFPEKDLKVEVLQQTEV
Ga0196901_10182473	F020160	N/A	MECRKRLAWQIASERSVVTREDAVELYHKMMKEFDAIDKRAKYKEAESSESQRT
Ga0196901_10182474	F004278	N/A	MIRTLFNDIIQEVIKWWKRVWFEAKLKARLDMIELENRIESDLEREIEQRPIYSEKPIDPVLQPGESQKLGGAMELRAPWYNDEIQPQRQDGVQEASRVADRK