Scaffold Ga0196901_1012720

Overview

Basic Information

• Taxon OID: 3300022200
• Scaffold ID: Ga0196901_1012720
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3521
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.8455
  • Long. (^o): -76.4191

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024770	Metagenome / Metatranscriptome	204	Y
F056549	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196901_10127203	F024770	AGGAG	MPVSHNRISVTTEATKLTNDFDGRDGQTINVQNPTGGVDVYLGGAGVTTTDYGYLLKADTSFSIELQDDEKLYAVVASGTQTVNVIRQGA
Ga0196901_10127205	F056549	GGGGG	VATEPYVPIADYTTYDELMTELEVTTDAADTNATDLDTAVDNAEGHKNTAESLLAAKFNPLFLVGA