Scaffold Ga0196901_1006538

Overview

Basic Information

• Taxon OID: 3300022200
• Scaffold ID: Ga0196901_1006538
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5123
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.8455
  • Long. (^o): -76.4191

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005315	Metagenome	405	Y
F007006	Metagenome / Metatranscriptome	360	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196901_10065384	F005315	AGGAG	LLIVTCGDSFTFGEGLTKQSQAYPYLVSSALNAEVINLSQSGASEYLITTQIEQAVKLNPDLILVGHTNEYRWQVWDFRKNMRQGFIVATHVLTNEKYYRNWVLSEQLLGNKRQNTKEHRAAWHAAGMLYFSEEDEVQRLWECAVAKQIVLCQRAGIPLIHHCCFPHLQPNLAELTDDYVDFHLDLEKHKDPAPDNSHAGPKSHLTLSSLLIRKYRQNL
Ga0196901_10065385	F007006	AGG	MTENPIDPTDLTPEMKQELRGEINRIVDLMIIIDSTRESIASIKKDIKEQYAIPVATITKVTGLLRKQNLEEEDEKWQMIKDFVGICE