Scaffold Ga0196901_1004566

Overview

Basic Information

• Taxon OID: 3300022200
• Scaffold ID: Ga0196901_1004566
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6261
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (90.48%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.8455
  • Long. (^o): -76.4191

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003863	Metagenome	464	Y
F004110	Metagenome	452	Y
F007691	Metagenome / Metatranscriptome	346	Y
F013279	Metagenome / Metatranscriptome	272	Y
F017972	Metagenome	237	Y
F018135	Metagenome	236	Y
F031792	Metagenome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196901_100456610	F000821	AGGAGG	MNREYLEAKFDLCIDQAEKNLQEEEIAEAIKNLRRANSAMARLFGIEEEADE
Ga0196901_100456611	F001477	AGGAGG	MSNVYTIHPPKSELILFYEVVEPDGDNTWGGASCIEAMQWLSLAPAGSRLLISAWDSDEEDAHLVGQTIDITEIIQEARQVGR
Ga0196901_100456612	F003863	GGAGG	MESRQVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWIIDSNSRLTVGVHTRANAVPDVAGRTDYDRENEGYNGGEA
Ga0196901_100456613	F017972	GGAGG	VRTRHLSLVTHEHSVTTRVRSNVYSPYGPVNPASTTLLAQETLRANQEAQLLELLSSLESVVESLNYKSFTVYDTLVTATEAVRVALLHTPIDEAGTDV
Ga0196901_100456615	F013279	AGG	MQYDYRCPECNSELTIERSIHEDPREPSCFDCHIPMVRKWASPAVTFKGKGFYSNGG
Ga0196901_100456617	F004110	AGGAG	MAWAMTRANDHNVDLMEPIEERRRHNEQRIAYQMRRVAERYARKEKAVKSGYQTVDEVYYESFTLGQLLPFVIASVIDGTVLEQVQQMIQDGQPKGKSSPSEGGNLLASLIDIKKGYLQLEVEDQTLLRLRHHENFTLQQIAGHLECAISTADRRCAHSLRKLQEILGGISPWG
Ga0196901_10045662	F018135	AGG	MTIERVRHSGAVIVSQFVGEGAGEYLFTRTYYGYTIKQAKAQFKIAVEGEGK
Ga0196901_10045665	F007691	GGAGG	MDTLEQLINEIYEDNYSHLEFDEAMGGEGCNCPIHTTLNTIVKYRDGKEGE
Ga0196901_10045667	F031792	AGGTGG	MSYEPELNDPIFYAEEYEPAVKCFICGDPLDRDDIVWADVEGQIVKEGNDTAWCVACLPSEGESNE