Scaffold Ga0196901_1001331

Overview

Basic Information

• Taxon OID: 3300022200
• Scaffold ID: Ga0196901_1001331
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12516
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (96.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.8455
  • Long. (^o): -76.4191

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020895	Metagenome / Metatranscriptome	221	N
F024442	Metagenome / Metatranscriptome	206	Y
F046082	Metagenome / Metatranscriptome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0196901_10013311	F024442	AGGAG	MAKSAKITKVEGTSIDADIKEGKALGSIWRQTNSLKQTIKANGFDTRLGKLMQKLKAQSSLDSGQISRQTLTTYGIHCIDRRRRSEALWFVENETEVRAFIETSGFKGSSLTALQAAMRKAAKGSDEPQNEQPKAEPSNVGQSDEAPAKAERPKITHKVMVNTIINQAKLNGLDLEKIIEDLMASLPTEAKVAA
Ga0196901_100133114	F020895	AGGAG	VTIKAYEIVLEIDGQDSTITLDDTFPAIVDWHTACTMAVLMAKHVHPECEVEFVSCTEYDAEEYDDYGYIFPAPMQLH
Ga0196901_100133115	F046082	AGGAG	MEARIKLTQRMLSKSEINANKTVRQFLLDEFDMDYTDPFFNENKFTVTGEYIDGTEAKVNFFTRSGRGDKMISIQKLKQYADAGDIVRLISNSRDADGTRIFISVHRPYTEASTNAA