Scaffold Ga0196905_1042964

Overview

Basic Information

• Taxon OID: 3300022198
• Scaffold ID: Ga0196905_1042964
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1311
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002009	Metagenome / Metatranscriptome	604	Y
F010983	Metagenome / Metatranscriptome	296	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196905_10429641	F010983	N/A	GETLEEYAKRVVKDSKQSTTKAAEHGTRMHEQMEHILLGRAFSKEPELQPYIKTFKEWAEDNVEKTYWCERALVGAGYAGRCDAYVRLKRIGDAIIDLKNRKVNPKYSPFFETSDCPQLWAYRTASENPKAACVSVVLAANDPETLITRQWDEDELREAGIAFLAMLKVWAWSKKYVPPGMKL
Ga0196905_10429642	F002009	N/A	MGVEQEVCASGDEAMTPPTIGELGEAAADIVWRVMGKGSDKSAYGEWFNVDKPVHDYHIGRAMRHLSTAMLQLQKSTPCPDNNGETAADHLERALVRALFAWAQIKKEVPRL