Scaffold Ga0196905_1015505

Overview

Basic Information

• Taxon OID: 3300022198
• Scaffold ID: Ga0196905_1015505
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2449
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003805	Metagenome / Metatranscriptome	467	Y
F006109	Metagenome	381	Y
F017122	Metagenome / Metatranscriptome	242	Y
F043896	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196905_10155052	F006109	AGG	MTRYVVMVEDRWVTAVYGPGKGIGLTKSKEDASSWVTYERAVAAARTVAECTDSLVAVHSVEEPTYPRSWK
Ga0196905_10155053	F017122	N/A	MEVIPFQEQMDPEVNLGEGRSRTSSEKARLFELKIWLPGQGAMRDLVRAESLQQAILFAQNRYPNCRVEVPPTTAKKPKLARASSGPRETARRHSKLVEKKNDSANY
Ga0196905_10155054	F043896	GGAG	MTQQITEWARQSWGEVIVDQNRVDLLDKLYFWDGRDKKDHPMHSTYTGLYEKYTAN
Ga0196905_10155055	F003805	N/A	MRPIEHSTESCFHKAAQDKWLVDLFNKQDYRGLLEAALVLNTLHQLEKTKTAWAIREAADNLAGQFGLDRDSA