Scaffold Ga0196905_1012124

Overview

Basic Information

• Taxon OID: 3300022198
• Scaffold ID: Ga0196905_1012124
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2825
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006492	Metagenome / Metatranscriptome	372	Y
F015852	Metagenome / Metatranscriptome	251	Y
F032994	Metagenome	178	Y
F068776	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0196905_10121242	F032994	AGGAG	MNSIINPPVRTYWITFDGDDKASVLGYGWTDPNQRTDTIHVWETTTDEAVWLARLLEYGIVPEIDEQGNLVL
Ga0196905_10121243	F006492	AGG	MDAILEALASYGIAGIFLAVLVYYLNKLTDIHREERKDWQDANDRHVEKFSEVISENTKALVEMRGELKENRCKM
Ga0196905_10121245	F015852	GGAGG	MDWRGHLITVVLAFILGVIVAWKGCESEPITKVVEKPVPQVEYVDRWKVDTVRFVRRELITRYDTIYSEKIVSRLDTLLLIDTVSIVQAWLTEVANYDTTVSDVRVRWSNYQNRTENLTIQYKRKEQRFSVGLHGLVGVQTDFVQNTKPMFGVGLHGSIKKTYLSANYGYNGQHFIGVGVGRTIVSR
Ga0196905_10121246	F068776	GGA	MNYYYYQDAEVRAQVDELLQQNATIQANLGTDSTTEEREEAKRKWMELAKQIREIDPKFYRERIMAQHR