Scaffold Ga0196905_1010891

Overview

Basic Information

• Taxon OID: 3300022198
• Scaffold ID: Ga0196905_1010891
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3005
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006545	Metagenome / Metatranscriptome	370	Y
F012773	Metagenome / Metatranscriptome	277	Y
F032263	Metagenome / Metatranscriptome	180	Y
F093836	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0196905_10108911	F006545	GGA	MKVRDAAKLFEKYDRKTTSAMAEHNRAGGSVRKPVRSTKNASTADKYDRAKFIYRKAAQAITAGHPLKNDKGEPTPAALQFKRWAAKVPQNQDDLRELKALG
Ga0196905_10108913	F032263	AGG	MKKEVYEKPRPKTLGKPKTLSANQKRAAKAFAKKSGTAYPSLLANMAGARAKR
Ga0196905_10108917	F012773	GGA	MKEQGVTVMIGLLGPGKKMGKEADSLLEDDMSECPLATQDEIVNKGNKQKAILTASYGPAEDEKMCGNCEYGMKLKGCGLKKGEVFCDIFEFKCSDKNVCDAWDSMEEEED
Ga0196905_10108918	F093836	GGA	MVQDELKNWAWWCAGYVGPPVQDKAASAEGNYVSEEIWEGQEARYEPDQLAGERVEEIVRSLPSFSRVVLKATYIQYPYHLEHSIAQRLRISADRYKSELQKAHEMVARKLKND