Scaffold Ga0196905_1008491

Overview

Basic Information

• Taxon OID: 3300022198
• Scaffold ID: Ga0196905_1008491
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3475
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F005092	Metagenome / Metatranscriptome	412	Y
F026861	Metagenome / Metatranscriptome	196	Y
F040535	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196905_10084911	F000808	GAGG	MEYTYAITTSYDGKLVNTLRVSDMLEAVDAWTKCVDHGNAKEYATYNLSDPTGKMYTKTFYANGAVAIK
Ga0196905_100849112	F040535	AGG	MLTLSYTVEKEGNLITVSDRLMISEYQINNLMDTLVSHGYTVES
Ga0196905_10084913	F005092	AGGA	MDKLEYALRQIENCDLCNGQGVNYWSNGEDYDFEDCVCNPYGIILDEDGDVIWDNGLLSESELSIFATSEAN
Ga0196905_10084918	F026861	AGG	MKLDEFIKLVESEREATRLTNLEKIAKIVENTNTKKGKN