Scaffold Ga0196905_1007359

Overview

Basic Information

• Taxon OID: 3300022198
• Scaffold ID: Ga0196905_1007359
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3767
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004134	Metagenome / Metatranscriptome	451	Y
F008943	Metagenome / Metatranscriptome	325	Y
F058114	Metagenome / Metatranscriptome	135	Y
F065729	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0196905_100735913	F008943	GGAGG	MKFDGFDWVFLTIPIFIIVAAAVLTYGDQQQRVLFQQTYNKNLECRQSLKDQTVGRVNEICGDVPVIGDFVK
Ga0196905_100735914	F065729	GGAGG	MKKLEFRPITITYVRTMMFTPTSETFEDWDVEPTQESVYDWAVEEFLTTIEEEAKDGEWRNFTIITEDQPPVEIEWGDELEAL
Ga0196905_100735915	F058114	N/A	MIEITFTREELRHLYDVLLRNHLQVKQSVIDKIDKELIADEIYELLGDLECLDPTLDEEWQNKLWYDDPEDEYTIAVKRDPKMWNRQTIAELKTLIGKLEAQ
Ga0196905_10073597	F004134	N/A	MTKHPANDWEWEDTAEEAFVQWFNDDYGSPYSLRSEWFFGDCKVQDENTLKDLMYKWLHSAFLTGYNTGRCSPKLDDTGCYD