Scaffold Ga0196905_1006660

Overview

Basic Information

• Taxon OID: 3300022198
• Scaffold ID: Ga0196905_1006660
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4000
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033780	Metagenome	176	Y
F060870	Metagenome	132	Y
F103171	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196905_10066602	F060870	AGG	MDMATASIIVATITAVGGIIVAVINKFRKENHDDHAYVRGLLTMLYKSQNRIEHKVDRVDERLTSHIESHASEGMLDNGRTVHQDGVETTSQVS
Ga0196905_10066603	F103171	GGAGG	MGEQYTKMELKQLAKFLRKVYPGVGDQDELWNLIEKTEQLVKGKHGTSNRRRGDHK
Ga0196905_10066607	F033780	AGAAG	VSTCPWSLVAIHWIDAFDSSNGWIHTKDYAPKPQHVVSVGWLWPDLLEGYLSVTCSWCPEEEPELDSVGMVTHIPLGMVQRIVTLGEPDWCLTS