Scaffold Ga0196905_1003152

Overview

Basic Information

• Taxon OID: 3300022198
• Scaffold ID: Ga0196905_1003152
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6088
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (43.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002317	Metagenome / Metatranscriptome	571	Y
F003661	Metagenome / Metatranscriptome	474	Y
F007505	Metagenome	350	Y
F007971	Metagenome / Metatranscriptome	341	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196905_10031523	F007505	N/A	MNKLETLKAALEGRHDEILNYQINIDNYERAIAKINAEHADKPAIVEFRDCLIDMLESHKTEQLKAIIIRDVIADQVIELEES
Ga0196905_10031525	F007971	GAG	MAVKAKTGTGRLEHQPGRPKTTSQGYGQNSRPRRRGKKKLRGQGR
Ga0196905_10031526	F002317	N/A	MERHEEAGITAKPPESPFTQMVPALLTAAVVGLAGLFMQVAKLDQSVNTVAADIQELKNDSKERLSDLESRVRHIEMSLGTSR
Ga0196905_10031527	F003661	N/A	MDPTTAAVIAILVAAGSEIITLLPIKENSWVQLIIKALKVVFPKR