Scaffold Ga0196905_1003095

Overview

Basic Information

• Taxon OID: 3300022198
• Scaffold ID: Ga0196905_1003095
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6139
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (28.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001165	Metagenome / Metatranscriptome	760	Y
F001807	Metagenome / Metatranscriptome	631	Y
F003601	Metagenome / Metatranscriptome	477	Y
F007026	Metagenome	359	Y
F020342	Metagenome / Metatranscriptome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196905_100309510	F003601	AGG	MTDYTDDQLLAMAMANIGEYIHDNSPQYILIEEDPRNEDDYDTWEYGTEPLPQDHTWHSTSIDVESNEVK
Ga0196905_10030953	F007026	N/A	MEQTKKYPEISWTQNEYHQLRLALNALEAIRDRESKRHQMDEHLDGHTADVLLEVIGMLSDELDYDPTPSEPGEPPITLDEMHTVAWKEHQEMHR
Ga0196905_10030954	F001165	N/A	MQRLQAMQLVAKMKESADKHGIGFIGGFIAPNGEKFVMSNMDEDETQALLPDNLK
Ga0196905_10030957	F020342	N/A	MSAFTNSLNLFDRINLAACAERRASANVLDSTRWNGEYDTARLWMKYRLNKTTNYSYIED
Ga0196905_10030958	F001807	GAGG	MTVLAIEDTSFTDTHVTVTAVVDEMRLLYRATHFEPEEWAPALCQATIELDPEEPIPLDEDGFCAYLDHLDPQWQLLDTSVGDPD