Scaffold Ga0196905_1002690

Overview

Basic Information

• Taxon OID: 3300022198
• Scaffold ID: Ga0196905_1002690
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6607
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (40.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015587	Metagenome	253	Y
F019817	Metagenome	227	Y
F021097	Metagenome	220	Y
F091979	Metagenome	107	N
F095396	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196905_10026901	F091979	AGG	MLIAGRHAIGNSPFLQGWQQEYMKAHGSMPPQEKVIDFLVSVARNESIPIQNKQAELRLLDQMQRFSPGMIK
Ga0196905_100269012	F021097	AGG	MRRNEFVDACVAIFIGAHIGLLLSVGAQKLLNNYYKAMCNERPGHNLVYAHGFLGDTYYCVNSKYMN
Ga0196905_100269013	F015587	N/A	MAKLNIRKNIASALMSAATTIDNAKVPTKADIGEKLNEYRIRAAALIMPNDMAFVIQPKQGN
Ga0196905_100269020	F095396	AGG	MNPKNRAERVVALDAITEEAEKLAAKGADPLTVKSFTVGARKELANQRPDTEQYFDAAVAAKKAKNSF
Ga0196905_10026903	F019817	N/A	MQTAKPPVGLRITQRNLYQYFLAHKKKYKNTPCYVPRIPMQNSRLDQYLNALVKLEEYGLICVDRSSANYTGWIITDSKST