NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196905_1001258

Scaffold Ga0196905_1001258


Overview

Basic Information
Taxon OID3300022198 Open in IMG/M
Scaffold IDGa0196905_1001258 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9761
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011293Metagenome292Y
F013406Metagenome271N
F039115Metagenome164N
F049592Metagenome146N

Sequences

Protein IDFamilyRBSSequence
Ga0196905_100125818F039115AGGAGMAVATTYLASPTFGIGANLAGIKDLTDQCKSVVITKSRESLDQSSFGDTGRQFVGGLTNVTITATLLMEYSATPGTYVDLTSLVGTRCYVAVKPTSDAISATNPEFQVTGCYLESLDVVNGSVGELSEVEITLVGGTLVEDTTP
Ga0196905_10012583F011293GGAGGMTSSNIDPGDAAYRAWQLTKGDRMAQYGHPFDDYTRVRRIFGSITNYHHNLSTQEAIMFMVCVKLARLMKSLEEGKMHEDSLVDAIGYLNCLHMADAREALHDFPKHILGDMAIPYD
Ga0196905_10012585F013406GAGMNPLTIIAMAACAVSGFGLMLVSDPETDTAGLVSESTVYTAPLSGTVGLDSPSDASSGVSSVITTMPPYTGPGCQEWADTALRAGFVLDDLWIALQVAELESMCLPDVVGDNGDSFGLMQIHTPSWCKPTKYWPRGYLQTQGMIDDCTELFDPLTNLWVAWHIATKHGWENWSTYDRVVG
Ga0196905_10012587F049592GAGMAGLDKPLVLVVWHDAHTLDNDHWYDESDLKDTPCVVHSVGYRISKPNARHLCLAQSITDEQGSDNVLFIPARMVRKVVKLQIPHKRRKTR
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