NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0196905_1001090

Scaffold Ga0196905_1001090


Overview

Basic Information
Taxon OID3300022198 Open in IMG/M
Scaffold IDGa0196905_1001090 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10524
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (63.16%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036486Metagenome / Metatranscriptome170N
F068254Metagenome / Metatranscriptome125N
F069731Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0196905_100109013F069731AGGAMKPKPNFNTKTLWIKDALNLAVQAYVKNGKYHREDQYEYVETDEGPTERITVKGNKHLMREMFKQDSIYIDPKCNDMVEDIYTHYQGLVFKVMSNTATDFSQSVYKVITKDWVDIRDLGILAPLPSLYEAEMARNLFVDEIRNSQWVGTIGEKYTVSATLHEARYIRSRDFYVYTFISEGDLITHFSQKAINQWATVGVLREGEKYTITFKVKRQAYSSFYDCKDTVVNYLKVSD
Ga0196905_100109014F036486AGGAGMARTKQYVVYTREFSKGNVNSKIGVFVDEANKFIVNGQVNGGAIKFANLKMSRPTATKRLVDAGYDFNVRVLGTSSLQGALAMKEQLIDLLSATNKTVINEAA
Ga0196905_10010909F068254AGAAGGLKTQHTSKLFFKRFKYKAVVTTPQTSFIRYASRRDIESLFQAESLEQWYRPFDKLSYGYSTLSVDSLNDHRSKTRKSVWANRFTLYKLFIWINNNYLPKESKIRNEGDKLAFFTNNKEIWLNFCTEFKNEITELVWPKDEIQNQYFDEYPNNIICKQLPYGKYRYKINLKGTVTKNEGFADWIKNYNGEIKASDNLLTGIKRGYYYSDGKFLYSTNSEMMLLLQMYLGDTIQNVQQYITEDELYEQHKSN

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.