Scaffold Ga0196905_1000987

Overview

Basic Information

• Taxon OID: 3300022198
• Scaffold ID: Ga0196905_1000987
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11138
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (41.94%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F019817	Metagenome	227	Y
F056537	Metagenome	137	Y
F097236	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0196905_100098711	F019817	N/A	MPATATPALTINQRNLYAYFLNHRKKHGKTPCFVPRIPCQNSRIDQYLAALVKLEQYRLIRVDRCSDNYTGWIMTEPKL
Ga0196905_100098713	F001120	N/A	MSNPKSSINFDRTIAGFNITEHGVKSYSKSIKLGPFQLTLNARKSGVLGSISIPGTGLSKRNIRLF
Ga0196905_100098729	F056537	N/A	MNNIIYINDHILSVSIDTKAMTLVYRGCKYNQEEQAKKDQAWWNLAHRPWLCLKYRNICYFPYVTGGQIK
Ga0196905_10009873	F097236	GGAG	MIDLTTGWVQHPGVYGGWHLEYVDPVAGFDISIVTGPKGSGLMGVIAPGQPTTYEAWLPGLSNPTGYLTLDEIRGIIMYLREKYRDDTMYMD