Scaffold Ga0196905_1000908

Overview

Basic Information

• Taxon OID: 3300022198
• Scaffold ID: Ga0196905_1000908
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11736
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (26.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006492	Metagenome / Metatranscriptome	372	Y
F045065	Metagenome	153	N
F066601	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0196905_100090813	F066601	AGAAG	MDRELLNHLFRTVWPYVVTFLLGVIVAWKGCGTGAKVITETIEIEKPVYRTEYVDRWKTDTVRFVDRVTVTDTITNTIIQEREVLIIDTVQIIQAWLTEVNRYDTTITLADGKLKASWQNYQNLSEKAAFTYTSNVQKAPMYGIGLHASIEAQTDFGENVTPLLGIGMHGDIQKLYITANYKFNGDHYVGITVGRKLWQR
Ga0196905_100090815	F006492	AGG	MDAILEALASYGIAGIFLAVLVYYLNKLTDIHREERKDWQDANDKHVEKFADVISENTKALVEMRGELKDSRCKM
Ga0196905_100090819	F045065	N/A	MTESQKLIGTRGCKLLTGTGAFTSLKGYSIIAQEDTVFTTFEVSGVDALADFGLTGATVKAGAYIVVPASDAITAITMSSGSVVIYNQ