Scaffold Ga0196905_1000905

Overview

Basic Information

• Taxon OID: 3300022198
• Scaffold ID: Ga0196905_1000905
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11756
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010828	Metagenome	298	N
F047658	Metagenome	149	N
F082556	Metagenome	113	N
F101003	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196905_100090512	F010828	N/A	VRDSTLIREIKFLTFKPVKEQAAIDLLSDEELHELAQKLCNCPDDLIQEVVLLLLEMPEEKWQQINEGGYLRFYVVRTMMTMATSKRSSFSKLYDLHNHKKVDHEREDYDWEKEDDIALLETLMEELHWYDREVLKLWLEEGSYRKVGKKVDIPYKSIGNTVNKALEQLRDNYYAIHLERIIRERCRLPLD
Ga0196905_100090513	F101003	GAG	MQYILSALSASVAAYLWIEVFAIDLLIKKWMGMDESYSFKPLDCRLCMSFWFGVLYCVNDPEALLCVPLLSVLFERLMWRFEL
Ga0196905_100090514	F047658	N/A	VEVRTITEYLKQDPDWAKILTMDKKEVLLFIAERLDQITMMGQGRYSGRITRDEQKLYQEAWSYIDPKAKVCFTCGRTPQLMSVALLNFYQCQQENALTENGDGETETVSTKPKRKRRRRGSPSK
Ga0196905_10009055	F082556	AGTAG	MIVKLTTEKSVFVEVDGRTYYIDHSLDEPIIEYWTEEQEPITLIEDDSNTQD