NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196905_1000901

Scaffold Ga0196905_1000901


Overview

Basic Information
Taxon OID3300022198 Open in IMG/M
Scaffold IDGa0196905_1000901 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11777
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (70.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001841Metagenome / Metatranscriptome627Y
F019467Metagenome / Metatranscriptome229Y
F022190Metagenome / Metatranscriptome215Y
F055671Metagenome138Y
F090297Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0196905_100090111F019467N/AMANGEWATQRERKRSREEAREAKRRLQIEWQDKLWLAQNHPCGDEVLAWLSENRAEASKVGSSRWHLETLPDLHQRQQQLRQAAAFQEVLDRAKVSTQTLTVEEVLAAGGFPQNPQVQPVEKQKAPRTNKGKRQASRKRSS
Ga0196905_100090117F001841GGAMGQFNPPNFFLGLMRVAAWVFWRDPVKPEPPQPKRPRKPVLGYNVGDIPYELLAVVRVSWYRKGMTYEVEEYQVEESDDAVKQFHYIVGTALRQGADVCVLTQYEPEALGVQE
Ga0196905_100090118F090297N/AMYEPFQAKIANTDLIRWYDAVQWSRLALQAQIKKYNANGLNTAYDETQLEKLVELEQFLKMSWDQWKESVFPSETTQEVK
Ga0196905_100090119F022190AGGAGGVSQVQSIEELRFEGDHLVVDAIVDDMVVRYPQTTLEPAEWGPALCRGTLYFSDEDLIPATDAELRALLTDRVDDWAPLDTSDWNV
Ga0196905_10009014F055671AGGAGGVRLLAILTACGILAMGADNAAQLQRCESAGRSAAYCRLAVLGR
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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