Scaffold Ga0196905

Basic Information
Taxon OID	3300022198 Open in IMG/M
Scaffold ID	Ga0196905_1000823 Open in IMG/M
Source Dataset Name	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022198 Open in IMG/M

Scaffold ID

Ga0196905_1000823 Open in IMG/M

Source Dataset Name

Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12332
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (27.59%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (25.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

12332

Total Scaffold Genes

29 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (27.59%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	38.9819	Long. (^o)	-76.3716	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

38.9819

Long. (^o)

-76.3716

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001165	Metagenome / Metatranscriptome	760	Y
F001807	Metagenome / Metatranscriptome	631	Y
F002985	Metagenome / Metatranscriptome	515	Y
F003601	Metagenome / Metatranscriptome	477	Y
F019817	Metagenome	227	Y
F020341	Metagenome	224	Y
F042290	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196905_100082310	F001807	GGAGG	MTVLAIEHTSFIDDTHVTVTAVVDEMRLLYRATRFEPEEWAPALCEATIELDPGESIPLDEDGFCQYLDYLDPDWQVLDLTD
Ga0196905_100082312	F003601	AGG	MTDYTDDQLLAMAMANISEYIYDHSPHYVLIEDPRNAEDYDSWTYGMEVLPQDHTWRSTSITVDVSPSKAD
Ga0196905_100082321	F042290	N/A	MTLTYRGVKYNQEEQAKKDKVWWNLAHRPWLCLKYRNACYFPYVTGGQIK
Ga0196905_100082324	F020341	N/A	MKGFSSTKQTTRFSSYWVASYAKDNEDEPLGIHKKVLSYKPGQDKEVLMTKYCHSLMNLNPHVWEVLVHQGPSEIPDSGDQIVIRLSRELFNGCSELK
Ga0196905_100082326	F002985	N/A	MSYVIACWQWGQPHAITANSTTNKFELIPLDSEVALNRIFSHPYRAGAQQILTWINENDEDLSCKNLKVSDEAQFRK
Ga0196905_10008234	F019817	N/A	MPTAKPPVGLRITQRNLYQYFLAHKKKYKNTPCYVPRLPMQNSRLDQYLQALVRLEEYGLISVDRSSDNYTGWIIKDP
Ga0196905_10008236	F001165	N/A	MTTPNTPRIPDSLDMQRLQAMQLVAKMKESADKYGIGFIGGFIAPDGEKFIMTNMEDEDEINMLMPEDLK
Ga0196905_10008238	F001120	N/A	MTHKKSPINFDKTIAGFNITEKGIQSYSKSFSLGPFQITLNARESGVRGSISILGTGLSKRGIKLF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0196905_1000823

Overview

Ecosystem & Geography

Associated Families

Sequences