Scaffold Ga0196905_1000522

Overview

Basic Information

• Taxon OID: 3300022198
• Scaffold ID: Ga0196905_1000522
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15261
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018918	Metagenome	232	N
F028783	Metagenome	190	Y
F034555	Metagenome	174	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0196905_100052212	F034555	N/A	MSNPKLVLQIDGIKETLAELNKYDKVYRRQVTKDIKGAGAPIINTARQLIGDVPPLSGMVRGKLIKGREVYWTNKTAKAGLKIKVGRRASKGGTVQFKDKFDAENNPRESHSVTFKARPYQLMVAQQMDAAGAIYDHAGIKTKNTNFVNNLNIEVGSQPRAIDPAVQQHRETVQFAVKRIVDEVAKTLNKKLKVRYGN
Ga0196905_100052217	F018918	AGAAGG	MAVYSVKQKYLTDNYAVVVLVTNADPLEVGQSVTVAGVDATFNGTYTVEALPEYYFNGVDEQGFFLYDIELPIANQVLYAKTADNVNIVAASGSLTTTPVCTWITAAQIEDWLGIGTATAADTAFLTQCALAANNFCYARRREAGYKNESLTTVPNGAVSLGTIMYGGALYRQRGGVQDFASFDGLGTANSFGLSPMIKQLLGVDRPAVA
Ga0196905_10005226	F028783	N/A	LTRPYTVFKAPVVKAPLEGTDEFIRQVIKRAGGSLWNNGSFVIRDIRTKPGQISNHARGLAVDFSYRKMNDKGITDGRKTAMPFVQKLLRNADKLGIELVIDYQLNRSWKCDRCTWIKGKWSGGDWFHIEISPAMANNANLVKQAFSDVFKDMPKTV