Scaffold Ga0196905_1000292

Overview

Basic Information

• Taxon OID: 3300022198
• Scaffold ID: Ga0196905_1000292
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20200
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (27.66%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (28.57%)
• Associated Families: 14

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001165	Metagenome / Metatranscriptome	760	Y
F001807	Metagenome / Metatranscriptome	631	Y
F002738	Metagenome / Metatranscriptome	533	Y
F003687	Metagenome / Metatranscriptome	473	Y
F007026	Metagenome	359	Y
F015201	Metagenome / Metatranscriptome	256	Y
F015987	Metagenome / Metatranscriptome	250	Y
F043890	Metagenome / Metatranscriptome	155	Y
F054793	Metagenome	139	Y
F056537	Metagenome	137	Y
F056552	Metagenome	137	Y
F067537	Metagenome / Metatranscriptome	125	N
F097198	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0196905_100029214	F007026	N/A	MEQTQKYPEYPWTRNEYHQLQLVIDALKAICAREDKRHQMDEHLDPHMRNIVEEVIGMLEDEVDYDPTPNEPGEPPITAAEMHAAAWKEHQEMHR
Ga0196905_100029215	F001165	N/A	MTNPNTPRIPDSLDMERLQAMQLVAKMKESAERHGIGFIGGFISPNGEKFVMTNMEDQDDINALMPEDLK
Ga0196905_100029217	F001120	N/A	MTKHKSPINFDKTIAGFNITENGIKSYTKSIKLGPFQLTLNARESGVRGSISIPGTGLSKRNIKII
Ga0196905_100029219	F001807	GGA	MTVLAIENTSFSDTHVTITAIVDEMRLLYRATHFEPEEWAPALCTTTIELDPEEPIPLDEDGFCAYLDHLDPQWELLDTSDE
Ga0196905_100029227	F067537	N/A	MPTKRQFDYKIGDRVAERPKPHGIYTNNQETRQRIAQYRSQRYGEVVGINYKKNSSGAKQRFLLVRWDHLPSPTEHATARICPVSELERLTKEVIVPGE
Ga0196905_100029229	F015201	GGAGG	MNKALIVYLVDKKKKVARKDVESKHAIAELKKQSAATF
Ga0196905_100029230	F056537	GGA	MNDIIYINRHILSVSIDTKAMTLVYRGCKYNQEEQAKKDQAWWNLAHRPWLCLKYRNVCYFPYVTGGLIK
Ga0196905_100029238	F056552	N/A	MTPTHDQFTLLYEDENTKVLHEFKSVVADDVIQHLIDFLKGCGYMEESIYEVMNEYSQMYFDARKVQSFVMSTGLQAQQQSIDLD
Ga0196905_100029240	F097198	N/A	MLQFEMSPEDMFWQEKMMRSINECDSISELKEMATLLVRIATMRQVAIKGLVKDAMDLMSNQVDHDILTRLKEDSGPLQ
Ga0196905_100029243	F043890	N/A	MQKMYSSASLKPNSINKLKIEVIDEEDGSATIHIEWNENDPDLQWWTDLGEEGQKSFMIDALYEACACYVD
Ga0196905_100029244	F002738	N/A	MSIDTYGLSSEQYDEFFEDNIRFAAKLYLKTSQVLSEVGAGALDYKTILDMYQETVYATNDDCRRYQKANNPEALKDTDLLGIYPSREELLAEIQSVNVKVEALVDYISRLVETTTKGLEGIAENLVD
Ga0196905_100029247	F015987	N/A	MTQITQAKLNELSVIKLYEHYGALERSLPLLTPESQELAKAELEACANLRSEKVDRIYYAMASHEDALERIKKEGDLITQAKRHHEAQLRSLKGLLNYLRRVLPLDSNKITGRNYQFTLVKKKD
Ga0196905_10002925	F054793	GGAG	MHVYMLTEFNSRACCDEPHVIGYYASKRKAEAKAVELSAKQAKEEEKDWITSPCECGDRNCDYRDHFFNEWRVDKFDLAELSMRQLMKIELADADQD
Ga0196905_10002928	F003687	N/A	MNYQAVEHLLTQDARLLARRDSPVIDQEIEADRQAALDLFFKWQDGMAQFQDLMPFCVILQRKVDLNRDLLRWERRHED