Scaffold Ga0196905_1000009

Overview

Basic Information

• Taxon OID: 3300022198
• Scaffold ID: Ga0196905_1000009
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 70998
• Total Scaffold Genes: 100
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (36.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036676	Metagenome	169	Y
F049570	Metagenome	146	Y
F055663	Metagenome	138	Y
F065740	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0196905_10000094	F036676	GGAG	MERHLATAGAVLAVLTAIVGTTIAIETRYAKSAEVKAQLEEYYAKQLKLRILEIDLKPNPTPADRALRQYLLQELNKGNGSTR
Ga0196905_100000962	F055663	N/A	MEDFFNLKISQKQIVCPKHGTHKHHISSDIEGYEGNWCMLCWLESLGPSLPLVDTEIK
Ga0196905_100000994	F065740	N/A	MSTFAFVNYARFLQKDGTATSPVYAYQNFSVNQPRIYGGVTYQFAPFAVSSGAGAKGGDRSETTLGAGLDALTVNIFTEAVTSRWLLELKTVSLDPETFADVTLIRSEVWRVARYEMDTEKILLTLTSPLDAVRSQVPRRYLSTKLVGALPSSATLVVS
Ga0196905_100000997	F049570	N/A	MAVTFPDLEPTSRSFTAPRWPTSGITAQSGVTSRRLWGSRPSQAQLSLQFNNASDDDAALIIAAYHEAKGATTDLTLPDALFAGASEELAPWLTTAATGAGIKWFFSEEPPSIESVAPGRSSVRVGLVGELRLA