Scaffold Ga0222625

Basic Information
Taxon OID	3300022195 Open in IMG/M
Scaffold ID	Ga0222625_1589078 Open in IMG/M
Source Dataset Name	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)

Source Dataset Category

Metatranscriptome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4411
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4411

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9201	Long. (^o)	-106.9487	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: East River, Colorado

Coordinates

Lat. (^o)

38.9201

Long. (^o)

-106.9487

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006057	Metagenome / Metatranscriptome	382	Y
F010456	Metagenome / Metatranscriptome	303	Y
F020525	Metagenome / Metatranscriptome	223	Y
F030712	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222625_15890781	F020525	AGGAGG	MKRMLASLAAAAFTVAPLAAQSFGMPNWSSPKGGTGVTISGDLAMPNSNLGKGTAFGARGSLGLANITLTAGLASWKPKGASESFTSFGGQAAFRVIGGSLIPVSISLQVGGAHVGAANGDSAVTRLGLGGAVSVSVPTPGLSIEPYLAVNDRFYKTSGTSGTPSNVAWTLGANVGLGMLGLHIAYDSENLGGGVKGGIFGVGVHVALKAPIGM
Ga0222625_15890783	F006057	GGAGG	MRKLFGGMVLVVLVLSLPAAAQAQRRAAAPMGGAKHEFGVDVGLAYVSSNITGVDGGIVMVTPLDVRFGFVPRSGKMMWEPRLTLNFSTVGGNTTYLFTPQVNMLYSNSTGGHRRGMYFTGGAGLVLGDGGAGSGTAVKLEGGIGWRKPYEGAAWRYEFGLQWVSSSAELGLAADYIAIGGRIGISLWH
Ga0222625_15890784	F010456	GGAGG	MRKLTSTLVAAVALVALPHLASAQRRAAASGPKNEIGVDLGASYSHTGSGCNTDCGGLGIGTPVDIRWGFMSNGLVSFEPRFSLNYVSGPNAGGGHFLVFNPDVNVIYRMKKSTARRGMYLTGGVGLAIANTAPSGGSSSTATQLSLNGGVGKRIPMESNAWRIEGFLRYNFENSGKGVPSSFDIGARLGMSFWR
Ga0222625_15890785	F030712	GGAG	MKQFGLVLLAAALCVVAARPAMAQGVRYGVSAGVLMPIGDYGDVDKLGFVGGAGATYWLAGQPIGIRGDVSYSSTSHDGAGATGSTKILGGTASVVYALNPASAPARIMLTAGVGMYNMDFGGGIAKQTKLGFGGGAAVAFKMGTGSTRLVVGTRYTTVSTDGTSRLNFLPITVGLTFGK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222625_1589078

Overview

Ecosystem & Geography

Associated Families

Sequences