Scaffold Ga0181354_1086856

Overview

Basic Information

• Taxon OID: 3300022190
• Scaffold ID: Ga0181354_1086856
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1028
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015354	Metagenome / Metatranscriptome	255	Y
F023295	Metagenome / Metatranscriptome	210	Y
F035672	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181354_10868561	F023295	AGGCGG	MLLSMLQGIGCMTRVILVPDGQPVQLAEPVRAKVYAFDATGKPVPSSNKVILPAG
Ga0181354_10868562	F015354	GGAG	MNPNLSSLIRHGLTAVGGFLVAKGLASADQVGELAGAVVTLIGLVLSMIKNKKATAPTPPPAA
Ga0181354_10868563	F035672	N/A	MLTDSIRDLSIGVGGPAGGLLIANFVPDPLLAHISITLGSLAALSVIIKNVLDIWSNRNK