NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181354_1045415

Scaffold Ga0181354_1045415


Overview

Basic Information
Taxon OID3300022190 Open in IMG/M
Scaffold IDGa0181354_1045415 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1459
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013413Metagenome271N
F014620Metagenome261N
F037730Metagenome167Y
F055728Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0181354_10454152F037730GAGGMKEFNEAESTNKYLIEQLVIARKQNEVLTEHIAKLVDDLKVSSQLLNACVAYMS
Ga0181354_10454153F055728N/AMRRGYDPSYGSREQLKDSADRNMAIARERDKLKTENAALLDEITELKAILKYIQEGE
Ga0181354_10454154F014620N/AMFAPSIGLGGTYERPAINRDIVIIAREAKPTSVDAALKAKSKTGKKRARVHAYLLSRPATDEEIETALNMSGNTVRPTRGTLVKDGHVIDSGIRRLTRAGNQAIVWRCV
Ga0181354_10454155F013413AGGLTIGKRLQATAGYLGTCATELGHANDRRGLGLVDDCMRIKSATTVIYPVQNINLNRKEKAMTKNEYNETFDMQMEREHQQTLKRMQEFRLIGEQISKMPDTPPKVLEIEVRYLMGIISELETRVKDLESEARRLEMLLTRAN

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