Scaffold Ga0181354_1027668

Overview

Basic Information

• Taxon OID: 3300022190
• Scaffold ID: Ga0181354_1027668
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1840
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017592	Metagenome	239	Y
F051785	Metagenome	143	N
F065547	Metagenome	127	N
F085065	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181354_10276682	F017592	GGAG	MYDDGDYGGIDEFMYWVTLVILFLMTIVFLGAVAGFMWAML
Ga0181354_10276684	F085065	AGGAG	MTKQEMLKILRLLSAIESVMLANKQAIPDYLFEQIDAAVVVLEREILK
Ga0181354_10276687	F051785	AGGA	MIDYLEFYKTYIPPPPLSTLEDPYVKHHRKYGDRFNAFYTQIPLWMKELYWYSFWKERNT
Ga0181354_10276688	F065547	AGGAG	MTQPNKQHIHERLGMSVEEALNRLIWFGQISHKYKEEFGETMNPKYLEAVLNATPPKEKN