Scaffold Ga0181354_1002991

Overview

Basic Information

• Taxon OID: 3300022190
• Scaffold ID: Ga0181354_1002991
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4113
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010682	Metagenome	300	Y
F025263	Metagenome / Metatranscriptome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181354_10029912	F010682	N/A	VTYTPLTNWKYDKSLYHPIQSGPQRTGDNQNLTNTYKLVSSGYILPNGVQQNWFGVNFEGADFGRIPVGPVNISGYLNTEWRAVPPAVSGYWTNYENSLPHASGLLDTYVGFRAQGRYSVAGRNVQTALGPQPGLRDFGAYTWFGAGVPDNQAYSPFNTPSSNEPYRYDADLGEFVGEGITGGPGTYQRVRYPALTNPTNDDSGSRAAWVYSPPVYCQVFTEASRSNLPGQMGVVVRSQYRGKSTRYVPNYGSVYGVLGEGIRNTIRKIG
Ga0181354_10029914	F025263	AGGAGG	MAIATNQLSVSKIYPGNYTNVLRFWHEEKTVQYNDANGVSTNLTNQPVGGPVGVVFRPGWIAQQAIGYVDLSYQALGTNNQLEYYTLPYGSGSNSAQQPFLNANVIIPSPDFHKDIRADITNGIIVPASGYVYRASLRIDGGDLVSSGVAGGSASPQVTLIPAVGVGLRDNGTVVSGQFGCSITGATSRIPNGSINSVNIFNSSSLAALANATTWKLFTTANLGGAAASGLAQGSGVYDPRAGTGRLFGANKSLAICEVCWILPDQPPERSDVALQPAGVIESSIFTSTSPS